PocketFinder

PocketFinder is a module that uses an artificial intelligence language model to predict the active site of a target protein.
Preceding modules: PDB File Upload, PDB Code Input, CaliciFold

Parameters

Top menu

① Toggle fullscreen
② Change background color
③ Rotate the molecule automatically
④ Shake the molecule automatically
⑤ Move molecule to the center
⑥ Save screenshot

Complex display options

You can choose from a variety of composite display options.
- Orthographic : Simplified representation, projecting a three-dimensional structure onto a plane. All lines are projected parallel.
- Perspective : More realistic representation, perspective effects make distant objects appear smaller.
- Stereo : Creates a pair of images, creating a stereoscopic effect when viewed through the left and right eye.
(This is a passive stereo method that is often used for output).

Ways to represent a Protein

Module running screen

Progress messages

Module completed

Result screen

After the execution is complete, you can modify the representation, Box Size, and Box Center to see what is shown on the screen.